Comparative transcriptome analysis of unripe and mid-ripe fruit of Mangifera indica (var. “Dashehari”) unravels ripening associated genes
Identifieur interne : 000278 ( Main/Exploration ); précédent : 000277; suivant : 000279Comparative transcriptome analysis of unripe and mid-ripe fruit of Mangifera indica (var. “Dashehari”) unravels ripening associated genes
Auteurs : Smriti Srivastava [Inde] ; Rajesh K. Singh [Suède] ; Garima Pathak [Inde] ; Ridhi Goel [Inde] ; Mehar Hasan Asif [Inde] ; Aniruddha P. Sane [Inde] ; Vidhu A. Sane [Inde]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
Ripening in mango is under a complex control of ethylene. In an effort to understand the complex spatio-temporal control of ripening we have made use of a popular N. Indian variety “Dashehari” This variety ripens from the stone inside towards the peel outside and forms jelly in the pulp in ripe fruits. Through a combination of 454 and Illumina sequencing, a transcriptomic analysis of gene expression from unripe and midripe stages have been performed in triplicates. Overall 74,312 unique transcripts with ≥1 FPKM were obtained. The transcripts related to 127 pathways were identified in “Dashehari” mango transcriptome by the KEGG analysis. These pathways ranged from detoxification, ethylene biosynthesis, carbon metabolism and aromatic amino acid degradation. The transcriptome study reveals differences not only in expression of softening associated genes but also those that govern ethylene biosynthesis and other nutritional characteristics. This study could help to develop ripening related markers for selective breeding to reduce the problems of excess jelly formation during softening in the “Dashehari” variety.
Url:
DOI: 10.1038/srep32557
PubMed: 27586495
PubMed Central: 5009307
Affiliations:
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Sane</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>CSIR- National Botanical Research Institute</institution>, Lucknow, 226001,<country>India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sane, Vidhu A" sort="Sane, Vidhu A" uniqKey="Sane V" first="Vidhu A." last="Sane">Vidhu A. Sane</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>CSIR- National Botanical Research Institute</institution>, Lucknow, 226001,<country>India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Ripening in mango is under a complex control of ethylene. In an effort to understand the complex spatio-temporal control of ripening we have made use of a popular N. Indian variety “Dashehari” This variety ripens from the stone inside towards the peel outside and forms jelly in the pulp in ripe fruits. Through a combination of 454 and Illumina sequencing, a transcriptomic analysis of gene expression from unripe and midripe stages have been performed in triplicates. Overall 74,312 unique transcripts with ≥1 FPKM were obtained. The transcripts related to 127 pathways were identified in “Dashehari” mango transcriptome by the KEGG analysis. These pathways ranged from detoxification, ethylene biosynthesis, carbon metabolism and aromatic amino acid degradation. The transcriptome study reveals differences not only in expression of softening associated genes but also those that govern ethylene biosynthesis and other nutritional characteristics. This study could help to develop ripening related markers for selective breeding to reduce the problems of excess jelly formation during softening in the “Dashehari” variety.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Singh, Z" uniqKey="Singh Z">Z. 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Adjaye</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Inde</li><li>Suède</li></country></list><tree><country name="Inde"><noRegion><name sortKey="Srivastava, Smriti" sort="Srivastava, Smriti" uniqKey="Srivastava S" first="Smriti" last="Srivastava">Smriti Srivastava</name></noRegion><name sortKey="Asif, Mehar Hasan" sort="Asif, Mehar Hasan" uniqKey="Asif M" first="Mehar Hasan" last="Asif">Mehar Hasan Asif</name><name sortKey="Goel, Ridhi" sort="Goel, Ridhi" uniqKey="Goel R" first="Ridhi" last="Goel">Ridhi Goel</name><name sortKey="Goel, Ridhi" sort="Goel, Ridhi" uniqKey="Goel R" first="Ridhi" last="Goel">Ridhi Goel</name><name sortKey="Pathak, Garima" sort="Pathak, Garima" uniqKey="Pathak G" first="Garima" last="Pathak">Garima Pathak</name><name sortKey="Pathak, Garima" sort="Pathak, Garima" uniqKey="Pathak G" first="Garima" last="Pathak">Garima Pathak</name><name sortKey="Sane, Aniruddha P" sort="Sane, Aniruddha P" uniqKey="Sane A" first="Aniruddha P." last="Sane">Aniruddha P. Sane</name><name sortKey="Sane, Vidhu A" sort="Sane, Vidhu A" uniqKey="Sane V" first="Vidhu A." last="Sane">Vidhu A. Sane</name><name sortKey="Srivastava, Smriti" sort="Srivastava, Smriti" uniqKey="Srivastava S" first="Smriti" last="Srivastava">Smriti Srivastava</name></country><country name="Suède"><noRegion><name sortKey="Singh, Rajesh K" sort="Singh, Rajesh K" uniqKey="Singh R" first="Rajesh K." last="Singh">Rajesh K. Singh</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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